Analysis of horizontal gene transfer in river sediment

  • Benigna Kiss Department of Microbiology, Eötvös Loránd University
  • Márta Vargha Department of Microbiology, Eötvös Loránd University
  • Károly Márialigeti Department of Microbiology, Eötvös Loránd University
Keywords: Escherichia coli XLl-Blue strain, horizontal gene transfer, river sediment, tetracycline resistance

Abstract

Horizontal gene transfer is a spontaneous, natural process. It is primarily common among Bacteria and Archea, but has also been found among more developed organisms. Serious hazards may occur when artificial genes spread laterally from genetically modified organisms (GMOs) in natural habitats, with the ability to ruin even eukaryotic gene-pools. However, the very same process, horizontal transfer of catabolic genes, or even that of complete operons may be put into practice for bioremediation, a method yet waiting to be developed. In our work horizontal transfer of tetracycline resistance gene was investigated in river sediment microcosm, which is a medium that has not been researched regarding this question until now. Horizontal gene transfer is reported in the Danube sediment in this work. It has been found that the presence of the donor organism in high numbers is inevitable for the process. The results derived here will be used later in research about transfer of catabolic genes that may be responsible for decomposing xenobiotics.

References

Barkay, T., Kroer, N., Rasmussen, L. D. & S0rensen, S. J. (1995): Conjugal transfer at natural population densities in a microcosm simulating an estuarine environment. - Microbiol. Ecol. 16: 43-54.

Christensen, B. B., Sternberg, C., Andersen, J. B., Eberl, L., Möller, R, S., Giskov, M. & Molin, S. (1998): Establishment of new genetic traits in a microbial biofilm community. -Appl. Environ. Microbiol. 64(6): 2249-2255.

Clerck, S. & Simonét, P. (1998): A review of available systems to investigate transfer of DNA to indigenous soil bacteria. - Antonie Van Leeuwenhoek. 73(1): 15-23. Review.

Coughter, J. P. & Stewart, G. J. (1989): Genetic exchange in the environment. - Antonie Van Leeuwenhoek. 55(1): 15-22. Review.

Daane, L. L. & Haggblom, M. M. (1999): Earthworm egg capsules as vectors for the environmental introduction of biodegradative bacteria. - Appl. Environ. Microbiol. 65(6): 2376-2381.

de la Cruz, F. & Davies, J. (2000): Horizontal gene transfer and the origin of species: lessons from bacteria. - Trends in Microbiol. 8 : 128-132.

Dröge, M., Piihler, A. & Selbitschka, W. (1999): Horizontal gene transfer among bacteria in terrestrial and aquatic habitats as assessed by microcosm and field studies.-Biol. Fert. Soils 29:221-245.

Herrick, J. B., Stuart-Keil, K. G., Ghiorse, W. C. & Madsen, E. L. (1997): Natural horizontal transfer of a naphthalene dioxygenase gene between bacteria native to a coal tar-contaminated field site. - Appl. Environ. Microbiol. 63(6): 2330-2337.

Jiang, S. C. & Paul, J. H. (1998): Gene transfer by transduction in the marine environment. - Appl. Environ. Microbiol. 64(8): 2780-2787.

Kidambi, S. P., Ripp, S. & Miller, R. V. (1994): Evidence for phage-mediated gene transfer among Pseudomonas aeruginosa strains on the phylloplane. - Appl. Environ. Microbiol. 60(2): 496-500.

Lisle, J. T. & Rose, J. B. (1995): Gene exchange in drinking water and biofilms by natural transformation. - Water Sei. Technoi. 31(5-6): 41-46.

Lorenz, M. G. & Wackernagel, W. (1994): Bacterial gene transfer by natural genetic transformation in the environment. - Microbiol. Rev. 58(3): 563-602.

Mai, P., Jacobsen, O. S. & Aamand, J. (2001): Mineralization and co-metabolic degradation of phenoxyalkanoic acid herbicides by a pure bacterial culture isolated from an aquifer. - Appl. Microbiol. Biotechnol. 56(3—4): 486—490.

Martinez, B., Tomkins, J., Wackett, L. P., Wing, R. & Sadowsky, M. J. (2001): Complete nucleotide sequence and organization of atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADP. -J . Bacteriol. 183(19): 5684-5697.

Massol-Deya, A. A., Odelson, D. A., Hickey, R. F. & Tiedje, J. M. (1995): Bacterial community fingerprinting of amplified 16S and 16-23S ribosomal DNA gene sequences and restriction endonuclease analysis (ARDRA). - In: Akkermans, A. D. L., Elsas, J. D. & Bruijn, F. J. (eds): Molecular microbial ecology manual. Kluwer Academic Publisher, Netherlands, 3.3.2: 1-8.

Nielsen, J. W., Josephson, K. L., Pepper, I. L., Arnold, R. B., di Giovanni, G. D. & Sinclair, N. A. (1994): Frequency of horizontal gene transfer of a large catabolic plasmid (pJP4) in soil. - Appl. Environ. Microbiol. 60(11): 4053—4058.

Stuart-Keil, K. G. (1998): Plasmids responsible for horizontal transfer of naphthalene catabolism genes between bacteria at a coal tar-contaminated site are homologous to pDTG 1 from Pseudomonas putida NCIB 9816-4. -Appl. Environ. Microbiol. 64(10): 3633-3640.

Tiirola, M. A., Wang, H., Paulin, L. & Kulomaa, M. S. (2002): Evidence for natural horizontal transfer of the pcpB gene in the evolution of polychlorophenol-degrading Sphingomonads. - Appl. Environ. Microbiol. 68(9): 4495—1501.

van der Meer, J. R., de Vos, W. M., Harayama, S. & Zehnder, A. J. (1992): Molecular mechanisms of genetic adaptation to xenobiotic compounds. - Microbiol. Rev. 56(4): 677-694.

Vargha, M., Szabó, G. & Márialigeti, K. (2000): A dunai kavicságy biológiai szűrőképességének elemzése I. Laboratóriumi modellrendszer beállítása és jellemzése. - Hidrológiai Közlöny 80(4): 233-237.

Published
2004-12-31