III. Béla király csontjainak tanúsága – Az Árpád-ház eredete
Absztrakt
The role of applications based on machine learning is continuously growing in the industry, health sector/bioinformatics and scientific research. American researchers published a bit more than 10 years ago the first machine learning algorithms, which were able to safely predict Y-SNP based haplogroups from Y-STR data.
The goal of the present study was to predict with machine learning algorithms the SNP-based subgroup of three ancient DNA samples (King Béla III and two Khazar samples) belonging to Y-DNA Haplogroup R1a, in order to predict their geographic origin and mutual genetic relatedness more accurately. This is the first study applying machine learning algorithms for researching Hungarian prehistory.
Based on the Y-STR haplotype of King Béla III, we estimated with the machine learning algorithm in the first step that he belonged to the R1a-Z93 subgroup that is most common among Indo-Iranic and Turkic speaking peoples. The second step predicted that King Béla III belonged to the Z2123 subgroup of R1a-Z93. The Phylogenetic analysis showed King Béla III most likely belonged to the relatively rare YP451+ YP449- subgroup of Z2123, which practically only appears in the North Caucasus, especially among Karachays and Balkars.
Based on our results, we could hypothetically conclude that the Árpád Dynasty has common origin with one ethnic component of the Karachay people.
In our study we proved that it is possible to increase the accuracy of Y-DNA haplogroup prediction of historical aDNA samples with mathematical methods using contemporary Y-STR haplotypes. With the help of this method, larger historical aDNA studies could save a lot of research funds and DNA carrying out tailored deep SNP-testing of samples instead of using general SNaPshots.
Hivatkozások
Allentoft, M.E., Sikora, M., Sjögren, K.G., Rasmussen, S., Rasmussen, M., Stenderup, J., Damgaard, P.B., Schroeder, H., Ahlström, T., Vinner, L., Malaspinas, A.S., Margaryan, A., Higham, T., Chivall, D., Lynnerup, N., Harvig, L., Aron, J., Della Casa, P., Dąbrowski, P., Duffy, P.R., Ebel, A.V., Epimakhov, A., Frei, K., Furmanek, M., Gralak, T., Gromov, A., Gronkiewicz, S., Grupe, G., Hajdu, T., Jarysz, R., Khartanovich, V., Khokhlov, A., Kiss, V., Kolar, J., Kriiska, A., Lasak, I., Longhi, C., McGlynn, G., Merkevicius, A., Merkyte, I., Metspalu, M., Mkrtchyan, R., Moiseyev, V., Paja, L., Pálfi, Gy., Pokutta, D., Pospieszny, L., Price, T.D., Saag, L., Sablin, M., Shishlina, N., Smrcka, V., Soenov, V.I., Szeverényi, V., Tóth, G., Trifanova, S.V., Varul, L., Vicze, M., Yepiskoposyan, L., Zhitenev, V., Orlando, L., Sicheritz-Ponten, T., Brunak, S., Nielsen, R., Kristiansen, K., Willerslev, E. (2015): Population genomics of Bronze Age Eurasia. Nature, 522(7555): 167–172. DOI: https://doi.org/10.1038/nature14507
Athey, T.W. (2006): Haplogroup Prediction from Y-STR Values using a Bayesian-allele-frequency approach. Journal of Genetic Genealogy, 2: 34–39.
Balanovsky, O., Zhabagin, M., Agdzhoyan, A., Chukhryaeva, M., Zaporozhchenko, V., Utevska, O., Highnam, G., Sabitov, Z., Greenspan, E., Dibirova, K., Skhalyakho, R., Kuznetsova, M., Koshel, S., Balanovska, E. (2015): Deep phylogenetic analysis of haplogroup G1 provides estimates of SNP and STR mutation Rates on the human Y-chromosome and reveals migrations of Iranic speakers. PLoS ONE, 10(4): e0122968 DOI: https://doi.org/10.1371/journal.pone.0122968
Bernert, Zs., Évinger, S., Fóthi, E. (2006): New symbolic trephination cases from Hungary. Annales historico-naturales Musei nationalis hungarici, 98: 177–183.
Bermisheva, M.A., Tambets, K., Villems, R., Khusnutdinova, E.K. (2002): Diversity of mitochondrial DNA haplogroups in ethnic Populations of the Volga–Ural Region. Molecular Biology, 36(6): 802–812.
Bíró, A.Z., Zalán, A., Völgyi, A., Pamjav, H. (2009): A Y‐chromosomal comparison of the Madjars (Kazakhstan) and the Magyars (Hungary). American Journal of Physical Anthropology, 139(3): 305–310. DOI: https://doi.org/10.1002/ajpa.20984
Bíró, A., Fehér, T., Bárány, G., Pamjav, H. (2015): Testing Central and Inner Asian admixture among contemporary Hungarians. Forensic Science International, Genetics, 15: 121–126. DOI: https://doi.org/10.1016/j.fsigen.2014.11.007
Boldog, Z., Petkes, Zs., Sudár, B., Türk A. (2015): From the ancient homelands to the Carpathians – From the finds to the apparel. Hungarian Archaeology, 2015(3): 1–8.
Brandstätter, A., Egyed, B., Zimmermann, B., Duftner, N., Padar, Z., Parson, W. (2007): Migration rates and genetic structure of two Hungarian ethnic groups in Transylvania, Romania. Annals of Human Genetics, 71(6): 791–803. DOI: https://doi.org/10.1111/j.1469-1809.2007.00371.x
B. Szabó, J., Sudár, B. (2014): Vgec-ügyek – Egy elfeledett ősapa. In: Türk, A., Balogh, Cs., Major, B. (Szerk.) Hadak Útján XXIV. A népvándorláskor fiatal kutatóinak XXIV. Konferenciája, 2. Magyar Őstörténeti Témacsoport Kiadványok, Magyar Tudományos Akadémia Bölcsészettudományi Kutatóközpont, Budapest.
Chen, T., Guestrin, C. (2016): XGBoost: A Scalable Tree Boosting System. In: Krishnapuram, B., Shah, M., Smola, A.J., Aggarwal, Ch.C., Shen, D., Rastogi, R. (2016): Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. ACM, San Francisco, USA. pp. 785–794.
Csősz, A., Szécsényi-Nagy, A., Csákyová, V., Langó, P., Bódis, V., Köhler, K., Tömöry, G., Nagy, M., Mende, B.G. (2016): Maternal genetic ancestry and legacy of 10th century AD Hungarians. Scientific Reports, 16(6): 33446. DOI: https://doi.org/10.1038/srep33446
Damgard, P., Marchi, N., Rasmussen, S., Peyrot, M., Renaud, G., Korneliussen, T., Moreno-Mayar, J.V., Pedersen, M.W., Goldberg, A., Usmanova, E., Baimukhanov, N., Loman, V., Hedeager, L., Pedersen, A.G., Nielsen, K., Afanasiev, G., Akmatov, K., Aldashev, A., Alpaslan, A., Baimbetov, G., Bazaliiskii, V.I., Beisenov, A., Boldbaatar, B., Boldgiv, B., Dorzhu, C., Ellingvag, S., Erdenebaatar, D., Dajani, R., Dmitriev, E., Evdokimov, V., Frei, K.M., Gromov, A., Goryachev, A., Hakonarson, H., Hegay, T., Khachatryan, Z., Khaskhanov, R., Kitov, E., Kolbina, A., Kubatbek, T., Lau, N., Margaryan, A., Merkyte, I., Mertz, I.V., Mertz, V.K., Mijiddorj, E., Moiyesev, V., Mukhtarova, G., Nurmukhanbetov, B., Orozbekova, Z., Panyushkina, I., Logvin, A., Sjögren, K.G., Štolcová, T., Taravella, A.M., Tashbaeva, K., Tkachev, A., Tulegenov, T., Voyakin, D., Yepiskoposyan, L., Undrakhbold, S., Varfolomeev, V., Weber, A., Sayres, M.A.W., Kradin, N., Allentoft, M.E., Orlando, L., Nielsen, R., Sikora, M., Heyer, E., Kristiansen, K., Willerslev, E. (2018): 137 ancient human genomes from across the Eurasian steppes. Nature, 557: 369–374. DOI: https://doi.org/10.1038/s41586-018-0094-2
Demény, I.P. (1996): Emese álma. Erdélyi Múzeum, 58: 1–2.
Éry, K., Marcsik, A., Nemeskéri, J., Szalai, Gy. (2008): Az épített sírok csontvázleletei, III. Béla király. In: Éry, K. (Szerk.) A Székesfehérvári királyi Bazilika embertani leletei 1848–2002. Balassi Kiadó, Budapest. pp. 37–67.
Fehér, T., Németh, E., Vándor, A., Kornienko, I.V., Csáji, L.K., Pamjav, H. (2015): Y-SNP L1034: limited genetic link between Mansi and Hungarian-speaking populations. Molecular Genetics and Genomics, 290(1): 377–386. DOI: https://doi.org/10.1007/s00438-014-0925-2
Haak, W., Lazaridis, I., Patterson, N., Rohland, N., Mallick, S., Llamas, B., Brandt, G., Nordenfelt, S., Harney, E., Stewardson, K., Fu, O., Mittnik, A., Bánffy, E., Economou, C., Francken, M., Friederich, S., Pena, R.G., Hallgren, F., Khartanovich, V., Khokhlov, A., Kunst, M., Kuznetsov, P., Meller, H., Mochalov, O., Moiseyev, V., Nicklisch, N., Pichler, S.L., Risch, R., Rojo Guerra, M.A., Roth, C., Szécsényi-Nagy, A., Wahl, J., Krause, J., Brown, D., Anthony, D., Cooper, A., Alt, K.W., Reich, D. (2015): Massive migration from the steppe was a source for Indo-European languages in Europe. Nature, 522: 207–211. DOI: https://doi.org/10.1038/nature14317
Ilumae, A.M., Reidla, M., Chukhryaeva, M., Järve, M., Post, H., Karmin, M., Saag, L., Agdzhoyan, A., Kushniarevich, A., Litvinov, S., Ekomasova, N., Tambets, K., Metspalu, E., Khusainova, R., Yunusbayev, B., Khusnutdinova, E.K., Osipova, L.P., Fedorova, S., Utevska, O., Koshel, S., Balanovska, E., Behar, D.M., Balanovsky, O., Kivisild, T., Underhill, P.A., Villems, R., Rootsi, S. (2016): Human Y chromosome haplogroup N: A non-trivial time-resolved phylogeography that cuts across language families. American Journal of Human Genetics, 99(1): 163–173. DOI: https://doi.org/10.1016/j.ajhg.2016.05.025
Janhunen, J. (2014): A legkeletibb uráliak. In: Csúcs, S. (Szerk.) Finnugor Világ. Reguly Társaság, Solymár.
Klima, L. (2016): Jürkák, tormák, merják: Szemelvények a finnugor nyelvű népek történetének korai forrásaiból. MTA Bölcsészettudományi Kutatóközpont, Budapest. p. 471.
Klyosov, A.A., Faleeva, T. (2017): Excavated DNA from Two Khazar Burials. Advances in Anthropology, 7: 17–21. DOI: https://doi.org/10.4236/aa.2017.71002
Lamnidis, T.C., Majander, K., Jeong, C., Salmela, E., Wessman, A., Moiseyev, V., Khartanovich, V., Balanovsky, O., Ongyerth, M., J., Pääbo, S., Onkamo, S., Haak, W., Krause, J., Schiffels, S. (2018): Ancient Fennoscandian genomes reveal origin and spread of Siberian ancestry in Europe. Nature Communications, 9: 5018. DOI: https://doi.org/10.1038/s41467-018-07483-5
Mathieson, I., Lazaridis, I., Rohland, N., Mallick, S., Patterson, N., Alpaslan Roodenberg, S., Harney, E., Stewardson, E., Fernandes, D., Novak, M., Sirak, K., Gamba, C., Jones, E.R., Llamas, B., Dryomov, S., Pickrell, J., Arsuaga, J.L., Bermudez de Castro, J.M., Carbonell, E., Gerritsen, F., Khokhlov, A., Kuznetsov, P., Lozano, M., Meller, H., Mochalov, O., Moiseyev, V., Guerra, M.A.R., Roodenberg, J., Verges, J.M., Krause, J., Cooper, A., Alt, K.W., Brown, D., Anthony, D., Lalueza-Fox, C., Haak, W., Pinhasi, R., Reich, D. (2015): Eight thousand years of natural selection in Europe. pp. Supplementary Information. Archaeological context for 83 newly reported ancient samples. 12–14. bioRxiv 016477. DOI: https://doi.org/10.1101/016477
Németh, E., Csáky, V., Székely, G., Bernert, Zs., Fehér, T. (2017): Új filogenetikai mértékek és alkalmazásuk. Anthropologiai Közlemények, 58: 3–36. DOI: https://doi.org/10.20330/AnthropKozl.2017.58.3
Neparáczki E., Maróti, Z., Kalmár,T., Kocsy, K., Maár, K., Bihari, P., Nagy, I., Fóthi, E., Pap, I., Kustár, Á., Pálfi, Gy., Raskó, I., Zink, A, Török, T. (2018): Mitogenomic data indicate admixture components of Central-Inner Asian and Srubnaya origin in the conquering Hungarians. PLoS One, 13(11): e0208295. DOI: https://doi.org/10.1371/journal.pone.0205920
Olasz, J., Seidenberg, V., Hummel, S., Szentirmay, Z., Szabados, Gy., Melegh, B., Kásler, M., (2018): DNA profiling of Hungarian King Béla III and other skeletal remains originating from the Royal Basilica of Székesfehérvár. Archaeological and Anthropological Sciences, 10: 1–13. DOI: https://doi.org/10.1007/s12520-018-0609-7
Pimenoff, V.N., Comas, D., Palo, J.U., Vershubsky, G., Kozlov, A., Sajantila, A. (2008): Northwest Siberian Khanty and Mansi in the junction of West and East Eurasian gene pools as revealed by uniparental markers. European Journal of Human Genetics, 16(10): 1254–1264. DOI: https://doi.org/10.1038/ejhg.2008.101
Róna-Tas, A., Berta, Á (2011): West Old Turkic. Turkic Loanwords in Hungarian, 2. Harrassowitz, Wiesbaden.
Sarkassian, C., Balanovsky, O., Brandt, G., Khartanovich, V., Buzhilova, A., Koshel, S., Zaporozhchenko, V., Gronenborn, D., Moiseyev, V., Kolpakov, E., Shumkin, V., Alt, K.W., Balanovska, E., Cooper, A., Haak, W. (2013): Ancient DNA reveals prehistoric gene-flow from Siberia in the complex human population history of North East Europe. Plos Genetics, 9(2): e1003296. DOI: https://doi.org/10.1371/journal.pgen.1003296
Schlecht, J., Kaplan, M.E., Barnard, K., Karafet, T., Hammer, M.F., Merchant, N.C. (2008): Machine-Learning Approaches for Classifying Haplogroup from Y Chromosome STR Data. PLos Computational Biology, 4(6): e1000093. DOI: https://doi.org/10.1371/journal.pcbi.1000093
Sípos, J., Tavkul, U. (2012): A régi magyar népzene nyomában. A kaukázusi karacsájok népzenéje. Zenetudományi Intézet – L’Harmattan, Budapest.
Skultéty, Gy. (2008): Arcok a székesfehérvári királyi bazilikából. In: Éry, K. (Szerk.) A Székesfehérvári királyi Bazilika embertani leletei 1848–2002. Balassi Kiadó, Bp. pp. 177–184.
Sudár, B. (2017): Turul szavunk művelődéstörténeti hátteréhez. Történelmi Szemle, 4: 605–619.
Szeifert, B., Csákyová., V., Stégmár, B., Gerber, D., Egyed, B., Botalov, S.G., Goldina., R.D., Danich, A.V., Türk, A., Mende, B.G., Szécsényi-Nagy, A. (2018): Maternal genetic composition of early Medieval (6–10th centuries AD) populations lived in the Cis- and Trans-Ural and Volga-Kama region. Archaeology of the Eurasian Steppes, 6: in press.
Tambets, K., Yunusbayev, B., Hudjashov, G., Ilumäe, A.M., Rootsi, S., Honkola, T., Vesakoski, O., Atkinson, Q., Skoglund, P., Kushniarevich, A., Litvinov, S., Reidla, M:, Metspalu, E., Saag, L., Rantanen, T., Karmin, M., Parik, J., Zhadanov, S.I., Reisberg, T., Dibirova, K., Evseeva, I., Nelis, M., Klovins, J., Metspalu, A., Esko, T., Balanovsky, O., Balanovska, E., Khusnutdinova, E.K., Osipova, L.P., Voevoda, M., Villems, R., Kivisild, T., Metspalu, M. (2018): Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations. Genome Biology, 19: 139. DOI: https://doi.org/10.1186/s13059-018-1522-1
Tan, P.N., Steinbach, M., Kumar, V. (2008): Introduction to Data Mining. Pearson, UK, p. 792.
Tóth, T. (1965): A honfoglaló magyarság ethnogenezisének problémája. Anthropologiai Közlemények, 9: 139–149.
Török, A. (1894): Ásatok az Árpádok testereklyéinek embertani búvárlatához. Értekezések a Természettudományok köréből, 23(9): 565–630.
Triska, P., Chekanov, N., Stepanov, V., Khusnutdinova, E.K., Kumar, G.P.A., Akhmetova, V., Babalyan, K., Boulygina, E., Kharkov, V., Gubina, M., Khidiyatova, I., Khitrinskaya, I., Khrameeva, E.E., Khusainova, R., Konovalova, N., Litvinov, S., Marusin, A., Mazur, A.M., Puzyrev, V., Ivanoshchuk, D., Spiridonova, M., Teslyuk, A., Tsygankova, S., Triska, M., Trofimova, N., Vajda, E., Balanovsky, O., Baranova, A., Skryabin, K., Tatarinova, T.V., Prokhortchouk, E. (2017): Between Lake Baikal and the Baltic Sea: genomic history of the gateway to Europe. BMC Genetics, 18(Suppl. 1): 110. DOI: https://doi.org/10.1186/s12863-017-0578-3
Underhill, P.A., Poznik, G.D., Rootsi, S., Järve, M., Lin, A.A., Wang, J., Passarelli, B., Kanbar, J., Myres, N.M., King, R.J., Di Cristofaro, J., Sahakyan, H., Behar, D.M., Kushniarevich, A., Šarac, J., Šaric, T., Rudan, P., Pathak, A.K., Chaubey, G., Grugni, V., Semino, O., Yepiskoposyan, L., Bahmanimehr, A., Farjadian, S., Balanovsky, O., Khusnutdinova, E.K., Herrera, R.J., Chiaroni, J., Bustamante, C.D., Quake, S.R., Kivisild, T., Villems, R. (2015): The phylogenetic and geographic structure of Y-chromosome haplogroup R1a. European Journal of Human Genetics, 23: 124–131. DOI: https://doi.org/10.1038/ejhg.2014.50
Völgyi, A., Zalán, A., Szvetnik, E., Pamjav, H. (2009): Hungarian population data for 11 Y-STR and 49 Y-SNP markers. Forensic Science International: Genetics, 3(2): e27–28. DOI: https://doi.org/10.1016/j.fsigen.2008.04.006
Yunusbayev, B., Metspalu, M., Metspalu, E., Valeev, A., Litvinov, S., Valiev, R., Akhmetova, V., Balanovska, E., Balanovsky, O., Turdikulova, S. (2015): The Genetic legacy of the expansion of Turkic-speaking nomads across Eurasia. PLoS Genetics, 11(4): e1005068. DOI: https://doi.org/10.1371/journal.pgen.1005068